# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "Qploidy" in publications use:'
type: software
license: AGPL-3.0-or-later
title: 'Qploidy: Estimation of Ploidy and Detection of Aneuploidy Using Genotyping
  Data'
version: 1.5.2
doi: 10.1002/tpg2.70044
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Qploidy
abstract: Provides functions for estimating ploidy levels and detecting aneuploidy
  in individuals using allele intensities or allele count data from high-throughput
  genotyping platforms, including single nucleotide polymorphism (SNP) arrays and
  sequencing-based technologies. Implements method described in Taniguti et al. (2025)
  <https://doi.org/10.1002/tpg2.70044> an extended version of the 'PennCNV' signal
  standardization method by Wang et al. (2007) <https://doi.org/10.1101/gr.6861907>
  for higher ploidy levels. Computes B-allele frequencies (BAF), z-scores, and identifies
  copy number variation patterns.
authors:
- family-names: Taniguti
  given-names: Cristiane
  email: cht47@cornell.edu
preferred-citation:
  type: article
  title: 'Exploring chromosomal variations in garden roses: Insights from high-density
    SNP array data and a new tool, Qploidy'
  authors:
  - family-names: Taniguti
    given-names: Cristiane H.
  - family-names: Lau
    given-names: Jeekin
  - family-names: Hochhaus
    given-names: Tessa
  - family-names: Lopez Arias
    given-names: Diana C.
  - family-names: Hokanson
    given-names: Stan C.
  - family-names: Zlesak
    given-names: David C.
  - family-names: Byrne
    given-names: David H.
  - family-names: Klein
    given-names: Patricia E.
  - family-names: Riera-Lizarazu
    given-names: Oscar
  journal: The Plant Genome
  year: '2025'
  volume: '18'
  issue: '2'
  doi: 10.1002/tpg2.70044
  url: https://acsess.onlinelibrary.wiley.com/doi/10.1002/tpg2.70044
  notes: 'ISSN: 1940-3372'
repository: https://cristianetaniguti.r-universe.dev
repository-code: https://github.com/Cristianetaniguti/Qploidy
commit: b2456f604b9bd54fcffa2d064d5b18135b24e0ce
url: https://github.com/Cristianetaniguti/Qploidy
date-released: '2026-05-21'
contact:
- family-names: Taniguti
  given-names: Cristiane
  email: cht47@cornell.edu