NEWS

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Qploidy 1.5.2

• Z-score calculation is now only applied to markers not filtered by genotype probabilities and missing data
• Markers filtered out during standardization are not considered to define the window boundaries for HMM CNV estimation
• Last window of each chromosome are never smaller than the defined window size
• CN HMM plots follow same scale for easier comparison between metrics by window

Qploidy 1.5.1

• Fix HMM CNV estimation when some of the windows don't have heterozygous genotypes (use only z-score for them)
• Improve Shiny interface for HMM CNV estimation

Qploidy 1.5.0

• Add HMM to estimate CN (beta version)
• Shiny interface improvements
• Add CSV or TSV as possible input files

Qploidy 1.1.0

• Beta version of Qploidy + BIGapp interface
• Fix Bioconductor dependency call
• Fix %>% call

Qploidy 1.0.0

• First release
• Functions improvements including comprehensive documentation
• Vignette with functional simulated example
• Testthat tests included
• CRAN submission

Qploidy 0.0.0.9000

• This is a beta version
• Initial addition of functions
• First version of the vignette